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Species belonging to selected taxon:

Fragaria vesca



ABOUT THIS RECORD

ID: MNEST000695
species: Fragaria vesca
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0

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pre-miRNA
GTTTTAGCTAGGGTTATGGAGTGGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCT
GTTTTTTGATAAAGATGATAGGCTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCTACACCTTGG
CTTATCTGTCTC


dot-bracket secondary structure
.....(((((((((......((((((((((((..(((((((.....(((((.(((((((....((((((.(((((.((((....(((((..(((((((((
............))).))))))..)))))....)))).))))).)))).))..)))).))).))))).....)))))))..)))))))))))))))))))
))..........



SIMILARITIES
miRBase ptc-MIR159b: 1e-20

PMRD ptc-miR159b: 1e-20

microPC miR159: 5e-94
UniProt no hits

RFAM MIR159: 6e-17
most similar mature miRNAs

Identical with: miR159 from microPC (MNEST044801)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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